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outputs: OUTPUT_FILE: type: File outputBinding [ job spadesTool.cwl ] Job error : spadesTool.cwl:38:3: Error collecting output for parameter "OUTPUT_FILE" : spadesTool.cwl:41:7: Did not find output file with glob pattern: '[' contigs.fasta ']' [ job spadesTool.cwl ] completed...

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The aim of what I'm trying to do is to process a csv file where I will get an output of a count representing the top 10 salaries from the file, but it does not work ...

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Amazon EMR Documentation. Amazon EMR is a web service that makes it easy to process large amounts of data efficiently. Amazon EMR uses Hadoop processing combined with several AWS products to do such tasks as web indexing, data mining, log file analysis, machine learning, scientific simulation, and data warehousing.

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Text file RDDs can be created using SparkContext’s textFile method. This method takes a URI for the file (either a local path on the machine, or a hdfs://, s3a://, etc URI) and reads it as a collection of lines. Here is an example invocation: JavaRDD < String > distFile = sc. textFile ("data.txt");

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The regular expression ".*_m_000123_0" would keep the files for the first instance of map 123 that ran. Parameters: pattern - the java.util.regex.Pattern to match against the task names.

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May 19, 2014 · Hadoop comes with a streaming jar that allows you to write your mappers and reducers in any language you like – just take input from stdin and output to stdout and you’re laughing. I’ll show you how to achieve this using Python.

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